The condition you described is called "oil canning". The decking is probably holding the sides of the boat rigid not allowing it to flex which, under normal conditions, would pull the aluminum tight on the bench. There are several things you can do to prevent oil canning. You could cut a small relief somewhere on the bench which will allow the metal a place to move to rather than popping back and forth but that could weaken over time and maybe even result is cracks. I guess it all depends on how bad it's oil canning. If you can remove the bench, you could build some bracing out of aluminum square tubing to put under the seat of the bench. I did this when I rebuilt my Grumman and the increased stability it provided was far more than I expected. It's just a simple ladder design that installed with pop rivets under the bench seat that really gave it a lot more strength for my 360 lb. fat-a$$ and even allowed me to install a hatch in the bench without loosing any structural strength.