Two observations:
1) It looks like the stringers "bridge-across" from the sides to the floor at the side/floor intersection. The original intent (dont shoot the messenger) may have been for these two side gaps to be the main flow channels for water to the back.
2) The floor looks pretty flat just beyond the V section. If thats the case, the volume of water that will pond between each stringer is limited (it will kick on over to the gap on the sides) but yes, still annoying.
If those points make sense, maybe you just drill one moderate sized or a couple of well spaced small holes through each stringer to let 'er drain on to the back. Its hard to say exactly but the manufacturers tended to not be so stingy with the aluminum back when your boat was built. This tendancy to "over build" could mean the loss of stringer structural cross-section from drilling the hole(s) would be okay. In modern mainstream boats like a my Tracker or a Lowe, they are pushing the limits on aluminum skimping where the boat would likely fold up if you drilled a big hole in a stringer. The bottom of my Tracker looks like a wash board where the hull has warped between stringers. Yes Tracker, I'm shooting at you, don't get me started.
Note if you elect to go that route - after the first hole, drilling on the boat gets easier on you....just stay clear of the hull with that bit. You might want to consider hiding some boat floatation foam somewhere on that rig so you and your motor can get to shore just in case the boat swamps for whatever the reason.
Cheers.